{ "_id": "6a1f0290b401979e7341b36e", "Package": "combinIT", "Type": "Package", "Title": "A Combined Interaction Test for Unreplicated Two-Way Tables", "Version": "2.0.1", "Authors@R": "c(\nperson(\"Zahra\", \"Shenavari\", email = \"zshenavari@yahoo.com\", role = \"aut\"),\nperson(\"Hossein\", \"Haghbin\", email = \"haghbin@pgu.ac.ir\",role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-8416-2354\")),\nperson(\"Mahmood\", \"Kharrati-Kopaei\", email = \"mkharati@shirazu.ac.ir\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-5555-253X\")),\nperson(\"Seyed Morteza\", \"Najibi\", email = \"mor.najibi@gmail.com\", role = \"aut\")\n)", "Maintainer": "Hossein Haghbin ", "Description": "There are several non-functional-form-based interaction\ntests for testing interaction in unreplicated two-way layouts.\nHowever, no single test can detect all patterns of possible\ninteraction and the tests are sensitive to a particular pattern\nof interaction. This package combines six\nnon-functional-form-based interaction tests for testing\nadditivity. These six tests were proposed by Boik (1993)\n, Piepho (1994), Kharrati-Kopaei\nand Sadooghi-Alvandi (2007) ,\nFranck et al. (2013) , Malik et\nal. (2016) and\nKharrati-Kopaei and Miller (2016)\n. The p-values of these six\ntests are combined by Bonferroni, Sidak, Jacobi polynomial\nexpansion, and the Gaussian copula methods to provide\nresearchers with a testing approach which leverages many\nexisting methods to detect disparate forms of non-additivity.\nThis package is based on the following published paper:\nShenavari and Kharrati-Kopaei (2018) \"A Method for Testing\nAdditivity in Unreplicated Two-Way Layouts Based on Combining\nMultiple Interaction Tests\". In addition, several sentences in\nhelp files or descriptions were copied from that paper.", "URL": "https://github.com/haghbinh/combinIT", "BugReports": "https://github.com/haghbinh/combinIT/issues", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "TRUE", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "Repository": "https://haghbinh.r-universe.dev", "Date/Publication": "2025-10-20 09:57:28 UTC", "RemoteUrl": "https://github.com/haghbinh/combinit", "RemoteRef": "HEAD", "RemoteSha": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-18 08:19:59 UTC", "User": "root" }, "Author": "Zahra Shenavari [aut],\nHossein Haghbin [aut, cre] (ORCID:\n),\nMahmood Kharrati-Kopaei [aut] (ORCID:\n),\nSeyed Morteza Najibi [aut]", "MD5sum": "ad8af68ab440a0d3b50d2856873f6958", "_user": "haghbinh", "_type": "src", "_file": "combinIT_2.0.1.tar.gz", "_fileid": "833e4750e6fd246bc8c3d6194e0cba70919e1bb8a8525be9284c439b883b6394", "_filesize": 218339, "_sha256": "833e4750e6fd246bc8c3d6194e0cba70919e1bb8a8525be9284c439b883b6394", "_created": "2026-05-18T08:19:59.000Z", "_published": "2026-06-02T16:19:28.299Z", "_distro": "noble", "_jobs": [ { "job": 79118759400, "time": 126, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7052806403" }, { "job": 79118759342, "time": 134, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7052809699" }, { "job": 79118760615, "time": 135, "config": "linux-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7052809713" }, { "job": 79118759692, "time": 126, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7052806931" }, { "job": 79118760004, "time": 90, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7052794702" }, { "job": 79118759464, "time": 173, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7052822155" }, { "job": 79118759590, "time": 125, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7052806418" }, { "job": 79118759395, "time": 236, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7052842178" }, { "job": 79118758844, "time": 143, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7052764316" }, { "job": 79118758787, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7363535093" }, { "job": 79118759628, "time": 102, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7052798540" }, { "job": 79118760137, "time": 170, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7052821030" }, { "job": 79118759507, "time": 127, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7052807119" } ], "_buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/haghbinh/combinit", "_commit": { "id": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "author": "haghbinh ", "committer": "haghbinh ", "message": "submit to cran\n", "time": 1760954248 }, "_maintainer": { "name": "Hossein Haghbin", "email": "haghbin@pgu.ac.ir", "login": "haghbinh", "twitter": "@haghbinh", "description": "", "uuid": 36113130, "orcid": "0000-0001-8416-2354" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "Rcpp", "role": "Imports" }, { "package": "mvtnorm", "role": "Imports" }, { "package": "MASS", "role": "Suggests" }, { "package": "Matrix", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "haghbinh", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-42", "n": 1 }, { "week": "2025-43", "n": 1 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "haghbinh", "count": 97, "uuid": 36113130 }, { "user": "kharrati-kopaei", "count": 38, "uuid": 98765492 } ], "_userbio": { "uuid": 36113130, "type": "user", "name": "Hossein" }, "_downloads": { "count": 279, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/combinIT" }, "_devurl": "https://github.com/haghbinh/combinit", "_searchresults": 6, "_topics": [ "openblas", "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/combinIT.html", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/haghbinh/combinit", "_realowner": "haghbinh", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2022-03-21" }, { "version": "1.5.0", "date": "2022-06-17" }, { "version": "2.0.0", "date": "2022-10-21" }, { "version": "2.0.1", "date": "2025-10-20" } ], "_exports": [ "Boik_test", "CI_test", "Franck_test", "interaction_plot", "KKM_test", "KKSA_test", "Malik_test", "Piepho_test" ], "_datasets": [ { "name": "CNV", "title": "Copy number variation (CNV).", "object": "CNV", "class": [ "matrix", "array" ], "fields": {}, "rows": 6, "table": true, "tojson": true }, { "name": "IDCP", "title": "Impurity data in a chemical product (IDCP).", "object": "IDCP", "class": [ "matrix", "array" ], "fields": {}, "rows": 5, "table": true, "tojson": true }, { "name": "MVGH", "title": "The mean values of growth hormone (MVGH).", "object": "MVGH", "class": [ "matrix", "array" ], "fields": {}, "rows": 3, "table": true, "tojson": true }, { "name": "RDWW", "title": "Ratio of dry to wet wheat (RDWW).", "object": "RDWW", "class": [ "matrix", "array" ], "fields": {}, "rows": 4, "table": true, "tojson": true } ], "_help": [ { "page": "Boik_test", "title": "Boik's (1993) Locally Best Invariant (LBI) Test", "topics": [ "Boik_test" ] }, { "page": "CI_test", "title": "Combined Interaction Test", "topics": [ "CI_test" ] }, { "page": "CNV", "title": "Copy number variation (CNV).", "topics": [ "CNV" ] }, { "page": "Franck_test", "title": "Franck's (2013) et al. test for Interaction", "topics": [ "Franck_test" ] }, { "page": "IDCP", "title": "Impurity data in a chemical product (IDCP).", "topics": [ "IDCP" ] }, { "page": "interaction_plot", "title": "Interaction Plot", "topics": [ "interaction_plot" ] }, { "page": "KKM_test", "title": "Kharrati-Kopaei and Miller's (2016) Test for Interaction", "topics": [ "KKM_test" ] }, { "page": "KKSA_test", "title": "Kharrati-Kopaei and Sadooghi-Alvandi's (2007) test for interaction", "topics": [ "KKSA_test" ] }, { "page": "Malik_test", "title": "Malik's (2016) et al. Test for Interaction", "topics": [ "Malik_test" ] }, { "page": "MVGH", "title": "The mean values of growth hormone (MVGH).", "topics": [ "MVGH" ] }, { "page": "Piepho_test", "title": "Piepho's (1994) Test for Interaction", "topics": [ "Piepho_test" ] }, { "page": "RDWW", "title": "Ratio of dry to wet wheat (RDWW).", "topics": [ "RDWW" ] } ], "_readme": "https://github.com/haghbinh/combinit/raw/HEAD/README.md", "_rundeps": [ "mvtnorm", "Rcpp", "RcppArmadillo" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 3, "_indexed": true, "_nocasepkg": "combinit", "_universes": [ "haghbinh" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.1", "date": "2026-05-18T08:22:09.000Z", "distro": "noble", "arch": "aarch64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "266ba63fd76d57ccf0a00c1b9733bff8908162deba80d49ae5fb4af538a9b67e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.7.0", "os": "linux", "version": "2.0.1", "date": "2026-05-18T08:22:13.000Z", "distro": "noble", "arch": "x86_64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "6b7b1ed7fbc2ce9383ef06512ddaae0107fb5a3d2687b99cf34d2e61daf40fc3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.6.0", "os": "linux", "version": "2.0.1", "date": "2026-05-18T08:22:17.000Z", "distro": "noble", "arch": "aarch64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "1ce6cc22ff82e61dd7114a963bb754e8ebb78b69d1174d5bfad0dc33d6abd4df", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.6.0", "os": "linux", "version": "2.0.1", "date": "2026-05-18T08:22:08.000Z", "distro": "noble", "arch": "x86_64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "790547823b142a0582f13877999667a842e89dfd9401b73fd50f48fb888bf47e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.5.3", "os": "mac", "version": "2.0.1", "date": "2026-05-18T08:21:40.000Z", "arch": "aarch64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "65e1fa36ca4784aef76410c891390e614133bf6861ea89af912e8c64073ac7ec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.5.3", "os": "mac", "version": "2.0.1", "date": "2026-05-18T08:22:42.000Z", "arch": "x86_64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "476dd06d65d424a000ab2e487cd41ca355f34478579ed8a3aece40232ee969d3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.6.0", "os": "mac", "version": "2.0.1", "date": "2026-05-18T08:22:11.000Z", "arch": "aarch64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "3da96656979365704347d55ec93ed30b3cb4aedddcd2290f21382a6340129a40", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.6.0", "os": "mac", "version": "2.0.1", "date": "2026-05-18T08:23:21.000Z", "arch": "x86_64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "933709dd8396ea6b16c5f17992a02e832433b71ff124bba698fd88b27774cdea", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.7.0", "os": "win", "version": "2.0.1", "date": "2026-05-18T08:21:21.000Z", "arch": "x86_64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "6696c1ce58dc644faf220a23ac80995935f14e36e1e9054d4a664c7f842b64c8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.5.3", "os": "win", "version": "2.0.1", "date": "2026-05-18T08:21:40.000Z", "arch": "x86_64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "7a58af915d19899392824a6124d8bece3726455faab1a3b7c98da7abf595a167", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.6.0", "os": "win", "version": "2.0.1", "date": "2026-05-18T08:21:29.000Z", "arch": "x86_64", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "584c549151629e8706f93957acdbf21ece6d0e085e066000af913309a6f7f7d3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.1", "date": "2026-06-02T16:18:52.000Z", "arch": "emscripten", "commit": "a7f3fc77260b1e4f0f68539bd803bbc87d7039bf", "fileid": "b66875d1850bdfe207a5b77c5f7b959000cc9466778bdfe781b831e99a4f442b", "status": "success", "buildurl": "https://github.com/r-universe/haghbinh/actions/runs/26021754205" } ] }